Files in TCGAbiolinks
TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data

README.md

NEWS

NAMESPACE

DESCRIPTION

build/vignette.rds

data/clinical.biotab.rda

data/PCBC_stemSig.rda

data/Tumor.purity.rda

data/gbm.exp.legacy.rda

data/met.gbm.27k.rda

data/datalist

data/TabSubtypesCol_merged.rda

data/msi_results.rda

data/chol_maf.rda

data/dataBRCA.rda

data/dataREAD.rda

data/gbm.exp.harmonized.rda

data/tabSurvKMcompleteDEGs.rda

data/geneInfo.rda

data/dataDEGsFiltLevel.rda

data/geneInfoHT.rda

data/bcgsc.ca_CHOL.IlluminaHiSeq_DNASeq.1.somatic.maf.rda

data/dataREAD_df.rda

R/download.R

R/sysdata.rda

R/biomart.R R/visualize.R R/analyze.R R/clinical.R R/Pam50Info.R R/classifiers.R R/internal.R R/api.R R/prepare.R R/query.R R/TumorPurityInfo.R R/TCGAbiolinks.R R/methylation.R R/linkedOmics.R

vignettes/elmer3.png

vignettes/extension.Rmd

vignettes/oncoprint.png

vignettes/gui.Rmd

vignettes/.install_extras

vignettes/case4_elmer.png

vignettes/PreprocessingOutput.png

vignettes/mutation.Rmd

vignettes/_output.yaml

vignettes/bibliography.bib

vignettes/case1_EA.png

vignettes/query.Rmd vignettes/index.Rmd

vignettes/PCAtop200DEGs.png

vignettes/case2_Heatmap.jpg

vignettes/figure5exp.png

vignettes/EAplot.png

vignettes/elmer1.png

vignettes/download_prepare.Rmd

vignettes/_site.yml

vignettes/BRCA_heatmap.png

vignettes/figure4cluster.png

vignettes/figure5star.png

vignettes/subtypes.Rmd

vignettes/figure4surv.png

vignettes/CIMP-highvsCIMP-low_metvolcano.png

vignettes/case1_dnet.png

vignettes/casestudy.Rmd

vignettes/case2_surv.png

vignettes/analysis.Rmd vignettes/clinical.Rmd vignettes/classifiers.Rmd

vignettes/elmer4.png

vignettes/BRCA_cluster.png

vignettes/figure5met.png

vignettes/elmer2.jpg

vignettes/include/site.css

vignettes/include/logo.png

vignettes/include/before_body.html

vignettes/include/after_body.html

vignettes/include/header.html

vignettes/include/symbol.png

inst/CITATION

inst/doc/extension.Rmd inst/doc/casestudy.R inst/doc/gui.Rmd

inst/doc/index.html

inst/doc/gui.html

inst/doc/gui.R inst/doc/mutation.Rmd inst/doc/query.Rmd inst/doc/index.Rmd inst/doc/clinical.R inst/doc/download_prepare.Rmd

inst/doc/query.html

inst/doc/subtypes.html

inst/doc/casestudy.html

inst/doc/subtypes.Rmd inst/doc/subtypes.R inst/doc/download_prepare.R inst/doc/classifiers.R inst/doc/casestudy.Rmd

inst/doc/extension.html

inst/doc/extension.R

inst/doc/mutation.html

inst/doc/download_prepare.html

inst/doc/analysis.R inst/doc/mutation.R

inst/doc/classifiers.html

inst/doc/query.R inst/doc/analysis.Rmd inst/doc/clinical.Rmd inst/doc/index.R inst/doc/classifiers.Rmd

inst/doc/clinical.html

inst/doc/analysis.html

TCGAbiolinks documentation built on Nov. 8, 2020, 5:37 p.m.

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TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data

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TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data

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TCGAbiolinks TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data

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TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data

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TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data