Files in maigesPack

Functions to handle cDNA microarray data, including several methods of data analysis

R/deGenes2by2BootT.R R/deGenes2by2Ttest.R R/calcA-methods.R R/normLoc.R R/createMaigesRaw.R R/classifyKNN.R R/dim-methods.R R/classifySVMsc.R R/normScaleLimma.R R/bootstrapMI.R R/activeNet.R R/robustCorr.R R/relNetworkB.R R/show-methods.R R/tablesDE.R R/normRepLoess.R R/AllGenerics.R R/MI.R R/deGenes2by2Wilcox.R R/classifyKNNsc.R R/activeModScoreHTML.R R/kmeansMde.R R/createTDMS.R R/tableClass.R R/summarizeReplicates.R R/plotGenePair.R R/hierM.R R/colors.R R/classifyLDA.R R/normScaleMarray.R R/image-methods.R R/indexing-methods.R R/somMde.R R/loadData.R R/hierMde.R R/addPaths.R R/compCorr.R R/activeMod.R R/heatmapsM.R R/selSpots.R R/designANOVA.R R/calcW-methods.R R/summary-methods.R R/plot-methods.R R/AllClasses.R R/getLabels-methods.R R/coerce-methods.R R/deGenesANOVA.R R/print-methods.R R/bootstrapCor.R R/activeNetScoreHTML.R R/relNet2TGF.R R/somM.R R/classifyLDAsc.R R/contrastsFitM.R R/addGeneGrps.R R/classifySVM.R R/relNetworkM.R R/kmeansM.R R/bootstrapT.R R/boxplot-methods.R R/normOLIN.R man/maigesClass-class.Rd man/show-methods.Rd man/dim-methods.Rd man/normScaleMarray.Rd man/classifyLDA.Rd man/deGenes2by2Ttest.Rd man/boxplot-methods.Rd man/gastro.Rd man/bootstrapMI.Rd man/somMde.Rd man/relNet2TGF.Rd man/compCorr.Rd man/activeNet.Rd man/coerce-methods.Rd man/activeMod.Rd man/plotGenePair.Rd man/relNetworkB.Rd man/hierMde.Rd man/getLabels.Rd man/maigesDEcluster-class.Rd man/maiges-class.Rd man/maigesActMod-class.Rd man/somM.Rd man/loadData.Rd man/bracketMethods.Rd man/maigesRelNetM-class.Rd man/classifyKNNsc.Rd man/addGeneGrps.Rd man/normRepLoess.Rd man/normLoc.Rd man/maigesPreRaw-class.Rd man/calcW.Rd man/normOLIN.Rd man/activeNetScoreHTML.Rd man/calcA.Rd man/classifySVM.Rd man/relNetworkM.Rd man/maigesRaw-class.Rd man/heatmapsM.Rd man/createTDMS.Rd man/hierM.Rd man/selSpots.Rd man/tablesDE.Rd man/robustCorr.Rd man/maigesRelNetB-class.Rd man/bootstrapT.Rd man/normScaleLimma.Rd man/MI.Rd man/addPaths.Rd man/designANOVA.Rd man/createMaigesRaw.Rd man/classifySVMsc.Rd man/maigesANOVA-class.Rd man/maigesDE-class.Rd man/print-methods.Rd man/classifyLDAsc.Rd man/summarizeReplicates.Rd man/plot-methods.Rd man/deGenesANOVA.Rd man/bootstrapCor.Rd man/contrastsFitM.Rd man/tableClass.Rd man/deGenes2by2Wilcox.Rd man/summary-methods.Rd man/activeModScoreHTML.Rd man/deGenes2by2BootT.Rd man/classifyKNN.Rd man/kmeansMde.Rd man/image-methods.Rd man/kmeansM.Rd man/maigesActNet-class.Rd inst/doc/maigesPack_tutorial.R inst/doc/maigesPack_tutorial.pdf