MRcounts: Accessor for the counts slot of a MRexperiment object

In metagenomeSeq: Statistical analysis for sparse high-throughput sequencing

Description

The counts slot holds the raw count data representing (along the rows) the number of reads annotated for a particular feature and (along the columns) the sample.

Usage

MRcounts(obj, norm = FALSE, log = FALSE, sl = 1000)

Arguments

obj	a MRexperiment object.
norm	logical indicating whether or not to return normalized counts.
log	TRUE/FALSE whether or not to log2 transform scale.
sl	The value to scale by (default=1000).

Value

Normalized or raw counts

Author(s)

Joseph N. Paulson, [e-mail]

Examples

data(lungData)
head(MRcounts(lungData))

metagenomeSeq documentation built on Nov. 8, 2020, 5:34 p.m.