MRcounts: Accessor for the counts slot of a MRexperiment object

Description Usage Arguments Value Author(s) Examples

View source: R/allClasses.R

Description

The counts slot holds the raw count data representing (along the rows) the number of reads annotated for a particular feature and (along the columns) the sample.

Usage

1
MRcounts(obj, norm = FALSE, log = FALSE, sl = 1000)

Arguments

obj

a MRexperiment object.

norm

logical indicating whether or not to return normalized counts.

log

TRUE/FALSE whether or not to log2 transform scale.

sl

The value to scale by (default=1000).

Value

Normalized or raw counts

Author(s)

Joseph N. Paulson, [email protected]

Examples

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metagenomeSeq documentation built on May 2, 2018, 2:35 a.m.