Description Usage Arguments Value See Also Examples

View source: R/fitTimeSeries.R

Sets up a data-frame with the feature abundance, class information, time points, sample ids and returns the fitted values for the fitted model.

1 2 |

`formula` |
Formula for ssanova. Of the form: abundance ~ ... where ... includes any pData slot value. |

`abundance` |
Numeric vector of abundances. |

`class` |
Class membership (factor of group membership). |

`time` |
Time point vector of relative times (same length as abundance). |

`id` |
Sample / patient id. |

`include` |
Parameters to include in prediction. |

`pd` |
Extra variable. |

`...` |
Extra parameters for ssanova function (see ?ssanova). |

A list containing:

data : Inputed data

fit : The interpolated / fitted values for timePoints

se : The standard error for CI intervals

timePoints : The time points interpolated over

`cumNorm`

`fitTimeSeries`

`ssPermAnalysis`

`ssPerm`

`ssIntervalCandidate`

1 | ```
# Not run
``` |

metagenomeSeq documentation built on May 2, 2018, 2:35 a.m.

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