ssFit: smoothing-splines anova fit

Description Usage Arguments Value See Also Examples

Description

Sets up a data-frame with the feature abundance, class information, time points, sample ids and returns the fitted values for the fitted model.

Usage

1
2
ssFit(formula, abundance, class, time, id, include = c("class", "time:class"),
  pd, ...)

Arguments

formula

Formula for ssanova. Of the form: abundance ~ ... where ... includes any pData slot value.

abundance

Numeric vector of abundances.

class

Class membership (factor of group membership).

time

Time point vector of relative times (same length as abundance).

id

Sample / patient id.

include

Parameters to include in prediction.

pd

Extra variable.

...

Extra parameters for ssanova function (see ?ssanova).

Value

A list containing:

  • data : Inputed data

  • fit : The interpolated / fitted values for timePoints

  • se : The standard error for CI intervals

  • timePoints : The time points interpolated over

See Also

cumNorm fitTimeSeries ssPermAnalysis ssPerm ssIntervalCandidate

Examples

1
# Not run


Search within the metagenomeSeq package
Search all R packages, documentation and source code

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.