paxtoolsr
PaxtoolsR: Access Pathways from Multiple Databases through BioPAX and Pathway Commons

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paxtoolsr: PaxtoolsR: Access Pathways from Multiple Databases through BioPAX and Pathway Commons
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API

API for paxtoolsr
PaxtoolsR: Access Pathways from Multiple Databases through BioPAX and Pathway Commons

Global functions
.onAttach Source code
.onLoad Source code
addAttributeList Man page Source code
checkInputFile Source code
checkInputFilePc Source code
checkOutputFile Source code
convertDataFrameListsToVectors Man page Source code
convertSifToGmt Man page Source code
convertSifToSpia Source code
downloadFile Man page Source code
downloadPc Man page
downloadPc2 Man page Source code
downloadSignedPC Man page Source code
fetch Man page Source code
filterSif Man page Source code
getCacheFiles Man page Source code
getErrorMessage Man page Source code
getNeighbors Man page Source code
getPc Man page Source code
getPcDatabaseNames Man page Source code
getPcRequest Source code
getPcUrl Man page Source code
getShortestPathSif Man page Source code
getSifInteractionCategories Man page Source code
graphPc Man page Source code
integrateBiopax Man page Source code
loadSifInIgraph Man page Source code
mapAttributes Man page Source code
mapValues Man page Source code
mergeBiopax Man page Source code
pcDirections Man page Source code
pcFormats Man page Source code
pcGraphQueries Man page Source code
processPcRequest Man page Source code
readBiopax Man page Source code
readGmt Man page Source code
readPcPathwaysInfo Man page Source code
readSbgn Man page Source code
readSif Man page Source code
readSifnx Man page Source code
searchListOfVectors Man page Source code
searchPc Man page Source code
splitSifnxByPathway Man page Source code
summarize Man page Source code
summarizeSif Man page Source code
toCytoscape Man page
toGSEA Man page Source code
toLevel3 Man page Source code
toSBGN Man page Source code
toSif Man page Source code
toSifnx Man page Source code
topPathways Man page Source code
traverse Man page Source code
validate Man page Source code
paxtoolsr documentation built on Nov. 8, 2020, 8:29 p.m.

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