readSifnx: Read in a Extended SIF file
In paxtoolsr: PaxtoolsR: Access Pathways from Multiple Databases through BioPAX and Pathway Commons
Description
Usage
Arguments
Details
Value
Examples
Description
Read in a Extended SIF file
Usage
1
readSifnx(inputFile)
Arguments
inputFile
an inputFile
Details
SIFNX files from Pathway Commons commonly come a single file that
includes a tab-delimited sections for nodes and another for edges. The
sections are separated by an empty lines. These sections must be split before
they are read.
Value
a list with nodes and edges entries
Examples
1
results <- readSifnx(system.file("extdata", "test_sifnx.txt", package="paxtoolsr"))
paxtoolsr documentation built on Nov. 8, 2020, 8:29 p.m.
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Description Usage Arguments Details Value Examples
Description
Read in a Extended SIF file
Usage
1 | readSifnx(inputFile)
|
Arguments
inputFile |
an inputFile |
Details
SIFNX files from Pathway Commons commonly come a single file that includes a tab-delimited sections for nodes and another for edges. The sections are separated by an empty lines. These sections must be split before they are read.
Value
a list with nodes and edges entries
Examples
1 | results <- readSifnx(system.file("extdata", "test_sifnx.txt", package="paxtoolsr"))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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