summarize: Summarize a BioPAX file
In paxtoolsr: PaxtoolsR: Access Pathways from Multiple Databases through BioPAX and Pathway Commons
Description
Usage
Arguments
Details
Value
Examples
Description
This function provides a summary of BioPAX classes.
Usage
1
summarize(inputFile)
Arguments
inputFile
a string of the name of the input BioPAX OWL file
Details
BioPAX classes are defined by the BioPAX specification:
http://www.biopax.org/
Value
list with BioPAX class counts
Examples
1
2
summary <- summarize(system.file("extdata", "raf_map_kinase_cascade_reactome.owl",
package="paxtoolsr"))
paxtoolsr documentation built on Nov. 8, 2020, 8:29 p.m.
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Description Usage Arguments Details Value Examples
Description
This function provides a summary of BioPAX classes.
Usage
1 | summarize(inputFile)
|
Arguments
inputFile |
a string of the name of the input BioPAX OWL file |
Details
BioPAX classes are defined by the BioPAX specification: http://www.biopax.org/
Value
list with BioPAX class counts
Examples
1 2 | summary <- summarize(system.file("extdata", "raf_map_kinase_cascade_reactome.owl",
package="paxtoolsr"))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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