convertSifToGmt: Convert SIF to GMT
In paxtoolsr: PaxtoolsR: Access Pathways from Multiple Databases through BioPAX and Pathway Commons
Description
Usage
Arguments
Value
Examples
View source: R/convertSifToGmt.R
Description
Convert SIF to GMT
Usage
1
convertSifToGmt(sif, name = "gmt", returnSmallMolecules = FALSE)
Arguments
sif
a data.frame representing a SIF (Simple Interaction Format)
name
the name of the gene set
returnSmallMolecules
a boolean whether to return genes
or small molecules in the gene set
Value
a list with one entry being a vector
Examples
1
2
sif <- readSif(system.file("extdata", "test_sif.txt", package="paxtoolsr"))
gmt <- convertSifToGmt(sif)
paxtoolsr documentation built on Nov. 8, 2020, 8:29 p.m.
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Description Usage Arguments Value Examples
View source: R/convertSifToGmt.R
Description
Convert SIF to GMT
Usage
1 | convertSifToGmt(sif, name = "gmt", returnSmallMolecules = FALSE)
|
Arguments
sif |
a data.frame representing a SIF (Simple Interaction Format) |
name |
the name of the gene set |
returnSmallMolecules |
a boolean whether to return genes or small molecules in the gene set |
Value
a list with one entry being a vector
Examples
1 2 | sif <- readSif(system.file("extdata", "test_sif.txt", package="paxtoolsr"))
gmt <- convertSifToGmt(sif)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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