Files in paxtoolsr
PaxtoolsR: Access Pathways from Multiple Databases through BioPAX and Pathway Commons

NEWS
.Rinstignore
DESCRIPTION
NAMESPACE
inst/paxtoolsNotes.txt
inst/CITATION
inst/doc/using_paxtoolsr.R inst/doc/using_paxtoolsr.Rmd
inst/doc/using_paxtoolsr.html
inst/java/paxtools-4.3.1.jar
inst/extdata/biopax3-short-metabolic-pathway.owl
inst/extdata/dna_replication.owl
inst/extdata/raf_map_kinase_cascade_reactome.owl
inst/extdata/test_sifnx_250.txt
inst/extdata/test_gsea.gmt
inst/extdata/test_edgelist.txt
inst/extdata/tca_cycle.sif
inst/extdata/test_sifnx.txt
inst/extdata/REACT_12034-3.owl
inst/extdata/test_sifnx2.txt
inst/extdata/test_biopax.owl
inst/extdata/test_sbgn.xml
inst/extdata/test_sifnx_sm.txt
inst/extdata/test_sif.txt
inst/extdata/10523676-compact.xml
vignettes/using_paxtoolsr.Rmd R/getCacheFiles.R R/checkInputFile.R R/convertToDF.R R/getShortestPathSif.R R/convertSifToSpia.R R/summarize.R R/convertToPathwayList.R R/readSifnx.R R/toGSEA.R R/addAttributeList.R R/readSif.R R/readBiopax.R R/fetch.R R/getPcUrl.R R/loadSifInIgraph.R R/downloadSignedPC.R R/toSif.R R/summarizeSif.R R/getPc.R R/processPcRequest.R R/fromPsimi.R R/mapValues.R R/mergeBiopax.R R/getSifInteractionCategories.R R/paxtoolsr.R R/extractIds.R R/downloadPc.R R/getErrorMessage.R R/traverse.R R/getPcRequest.R R/topPathways.R R/downloadPc2.R R/validate.R R/checkOutputFile.R R/convertToDT.R R/pcGraphQueries.R R/convertSifnxIds.R R/filterSif.R R/readSbgn.R R/toLevel3.R R/searchPc.R R/toSBGN.R R/pcFormats.R R/searchListOfVectors.R R/getNeighbors.R R/downloadFile.R R/toSifnx.R R/integrateBiopax.R R/pcDirections.R R/readGmt.R R/splitSifnxByPathway.R R/graphPc.R man/splitSifnxByPathway.Rd man/readSifnx.Rd man/toSifnx.Rd man/graphPc.Rd man/readSif.Rd man/toSif.Rd man/getNeighbors.Rd man/summarizeSif.Rd man/pcDirections.Rd man/extractIds.Rd man/topPathways.Rd man/searchListOfVectors.Rd man/summarize.Rd man/toGSEA.Rd man/processPcRequest.Rd man/convertToDT.Rd man/searchPc.Rd man/downloadFile.Rd man/toSBGN.Rd man/skip_on_bioc.Rd man/getPcUrl.Rd man/convertSifnxIds.Rd man/mapValues.Rd man/addAttributeList.Rd man/getErrorMessage.Rd man/getCacheFiles.Rd man/getPc.Rd man/traverse.Rd man/mergeBiopax.Rd man/convertToDF.Rd man/readBiopax.Rd man/pcGraphQueries.Rd man/filterSif.Rd man/toLevel3.Rd man/getSifInteractionCategories.Rd man/integrateBiopax.Rd man/loadSifInIgraph.Rd man/downloadSignedPC.Rd man/readSbgn.Rd man/validate.Rd man/pcFormats.Rd man/getShortestPathSif.Rd man/fetch.Rd man/convertSifToSpia.Rd man/downloadPc2.Rd man/readGmt.Rd java/README.md
build/vignette.rds
tests/runTests.old
tests/testthat.R tests/testthat/test_pathwayCommons.R tests/testthat/test_paxtools.R
paxtoolsr documentation built on May 2, 2018, 2:11 a.m.