integrateBiopax: Integrate two BioPAX OWL files (DEPRECATED)
In paxtoolsr: PaxtoolsR: Access Pathways from Multiple Databases through BioPAX and Pathway Commons
Description
Usage
Arguments
Details
Value
See Also
Examples
View source: R/integrateBiopax.R
Description
This function merges two BioPAX OWL files
Usage
1
integrateBiopax(inputFile1, inputFile2, outputFile = NULL)
Arguments
inputFile1
a string of the name of the input BioPAX OWL file
inputFile2
a string of the name of the input BioPAX OWL file
outputFile
a string of the name of the output integrated BioPAX
OWL file
Details
This method is deprecated. Use mergeBiopax instead.
Value
an XMLInternalDocument representing a BioPAX OWL file
See Also
Examples
1
2
3
4
5
outFile <- tempfile()
results <- integrateBiopax(system.file("extdata", "raf_map_kinase_cascade_reactome.owl",
package="paxtoolsr"),
system.file("extdata", "dna_replication.owl", package="paxtoolsr"),
outFile)
paxtoolsr documentation built on Nov. 8, 2020, 8:29 p.m.
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Description Usage Arguments Details Value See Also Examples
View source: R/integrateBiopax.R
Description
This function merges two BioPAX OWL files
Usage
1 | integrateBiopax(inputFile1, inputFile2, outputFile = NULL)
|
Arguments
inputFile1 |
a string of the name of the input BioPAX OWL file |
inputFile2 |
a string of the name of the input BioPAX OWL file |
outputFile |
a string of the name of the output integrated BioPAX OWL file |
Details
This method is deprecated. Use mergeBiopax instead.
Value
an XMLInternalDocument representing a BioPAX OWL file
See Also
Examples
1 2 3 4 5 | outFile <- tempfile()
results <- integrateBiopax(system.file("extdata", "raf_map_kinase_cascade_reactome.owl",
package="paxtoolsr"),
system.file("extdata", "dna_replication.owl", package="paxtoolsr"),
outFile)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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