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toSif: Convert a BioPAX OWL file to SIF

Description Usage Arguments Details Value Examples

Description

Convert a BioPAX OWL file to a binary SIF file

Usage

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toSif(inputFile, outputFile = NULL)

Arguments

inputFile

a string of the name of the input BioPAX OWL file

outputFile

a string of the name of the output SIF file (Optional)

Details

Information on SIF conversion is provided on the Pathway Commons site: http://www.pathwaycommons.org/pc2/

Value

see readSif()

Examples

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outFile <- tempfile()
results <- toSif(system.file("extdata", "raf_map_kinase_cascade_reactome.owl", 
  package="paxtoolsr"), 
  outFile) 
  


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