toLevel3: Convert a PSIMI or older BioPAX OWL file to BioPAX Level 3
In paxtoolsr: PaxtoolsR: Access Pathways from Multiple Databases through BioPAX and Pathway Commons
Description
Usage
Arguments
Value
Examples
Description
This file will convert PSIMI or older BioPAX objects to BioPAX Level 3
Usage
1
Arguments
inputFile
a string of the name of the input file
outputFile
a string of the name of the output BioPAX OWL file
Value
an XMLInternalDocument representing a BioPAX OWL file
Examples
1
2
3
4
inputFile <- system.file("extdata", "raf_map_kinase_cascade_reactome.owl",
package="paxtoolsr")
outFile <- tempfile()
results <- toLevel3(inputFile, outFile)
paxtoolsr documentation built on Nov. 8, 2020, 8:29 p.m.
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Description Usage Arguments Value Examples
Description
This file will convert PSIMI or older BioPAX objects to BioPAX Level 3
Usage
1 |
Arguments
inputFile |
a string of the name of the input file |
outputFile |
a string of the name of the output BioPAX OWL file |
Value
an XMLInternalDocument representing a BioPAX OWL file
Examples
1 2 3 4 | inputFile <- system.file("extdata", "raf_map_kinase_cascade_reactome.owl",
package="paxtoolsr")
outFile <- tempfile()
results <- toLevel3(inputFile, outFile)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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