topPathways: Retrieve top pathways

Description Usage Arguments Details Value Examples

View source: R/topPathways.R

Description

This command returns all "top" pathways.

Usage

1
topPathways(datasource = NULL, organism = NULL, verbose = FALSE)

Arguments

datasource

filter by data source (same as for 'search').

organism

organism filter (same as for 'search').

verbose

a boolean, display the command used to query Pathway Commons

Details

Pathways that are neither 'controlled' nor 'pathwayComponent' of another process.

Value

a data.frame with the following columns:

Examples

1
2
datasource <- "panther"
#results <- topPathways(datasource=datasource)

paxtoolsr documentation built on May 31, 2017, 11:39 a.m.

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