This command returns all "top" pathways.
filter by data source (same as for 'search').
organism filter (same as for 'search').
a boolean, display the command used to query Pathway Commons
Pathways that are neither 'controlled' nor 'pathwayComponent' of another process.
a data.frame with the following columns:
uri URI ID for the pathway
biopaxClass the type of BioPAX object
name a human readable name
dataSource the dataSource for the pathway
organism an organism identifier
pathway URI ID for the pathway
datasource <- "panther" #results <- topPathways(datasource=datasource)
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