loadSifInIgraph: Load SIF as igraph Network
In paxtoolsr: PaxtoolsR: Access Pathways from Multiple Databases through BioPAX and Pathway Commons
Description
Usage
Arguments
Details
Value
Examples
View source: R/loadSifInIgraph.R
Description
Load SIF as igraph Network
Usage
1
loadSifInIgraph(sif, directed = TRUE)
Arguments
sif
a binary SIF as a data.frame with three columns:
"PARTICIPANT_A", "INTERACTION_TYPE", "PARTICIPANT_B"
directed
a boolean weather the returned graph should be directed (DEFAULT: TRUE)
Details
Users are likely to run into issues if the input SIF has factor levels
Value
a directed igraph network with interaction types
Examples
1
2
results <- readSif(system.file("extdata", "test_sif.txt", package="paxtoolsr"))
g <- loadSifInIgraph(results)
paxtoolsr documentation built on Nov. 8, 2020, 8:29 p.m.
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Description Usage Arguments Details Value Examples
View source: R/loadSifInIgraph.R
Description
Load SIF as igraph Network
Usage
1 | loadSifInIgraph(sif, directed = TRUE)
|
Arguments
sif |
a binary SIF as a data.frame with three columns: "PARTICIPANT_A", "INTERACTION_TYPE", "PARTICIPANT_B" |
directed |
a boolean weather the returned graph should be directed (DEFAULT: TRUE) |
Details
Users are likely to run into issues if the input SIF has factor levels
Value
a directed igraph network with interaction types
Examples
1 2 | results <- readSif(system.file("extdata", "test_sif.txt", package="paxtoolsr"))
g <- loadSifInIgraph(results)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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