readPcPathwaysInfo: Read in Pathway Commons Pathways Information
In paxtoolsr: PaxtoolsR: Access Pathways from Multiple Databases through BioPAX and Pathway Commons
Description
Usage
Arguments
Details
Value
Examples
View source: R/readPcPathwaysInfo.R
Description
Read in Pathway Commons Pathways Information
Usage
1
readPcPathwaysInfo(inputFile = NULL, version = NULL)
Arguments
inputFile
an inputFile; if NULL then retrieve the current pathways.txt; see details (default: NULL)
version
a version number for a previous version of Pathway Commons data;
versions 3 and above. Parameter set as version="8". Available versions "http://www.pathwaycommons.org/archives/PC2/"
Details
This file is generally found as pathways.txt.gz (e.g.
http://www.pathwaycommons.org/archives/PC2/current/pathways.txt.gz)
Value
a data.frame
Examples
1
2
inputFile <- system.file("extdata", "pathways.txt.gz", package="paxtoolsr")
results <- readPcPathwaysInfo(inputFile, version="8")
paxtoolsr documentation built on Nov. 8, 2020, 8:29 p.m.
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Description Usage Arguments Details Value Examples
View source: R/readPcPathwaysInfo.R
Description
Read in Pathway Commons Pathways Information
Usage
1 | readPcPathwaysInfo(inputFile = NULL, version = NULL)
|
Arguments
inputFile |
an inputFile; if NULL then retrieve the current pathways.txt; see details (default: NULL) |
version |
a version number for a previous version of Pathway Commons data; versions 3 and above. Parameter set as version="8". Available versions "http://www.pathwaycommons.org/archives/PC2/" |
Details
This file is generally found as pathways.txt.gz (e.g. http://www.pathwaycommons.org/archives/PC2/current/pathways.txt.gz)
Value
a data.frame
Examples
1 2 | inputFile <- system.file("extdata", "pathways.txt.gz", package="paxtoolsr")
results <- readPcPathwaysInfo(inputFile, version="8")
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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