splitSifnxByPathway: Splits SIFNX entries into individual pathways
In paxtoolsr: PaxtoolsR: Access Pathways from Multiple Databases through BioPAX and Pathway Commons
Description
Usage
Arguments
Details
Value
View source: R/splitSifnxByPathway.R
Description
Splits SIFNX entries into individual pathways
Usage
1
splitSifnxByPathway(edges, parallel = FALSE)
Arguments
edges
a data.frame with SIF content with the additional column "PATHWAY_NAMES".
"PATHWAY_NAMES" should include pathway names delimited with a semi-colon: ";".
parallel
a boolean that will parallelize the process; requires foreach/doSNOW/parallel packages
Details
This method can be slow; ~1.5 minutes for 150K+ rows.
Has a parallelized method to speed things up.
Value
a list of where each entry is a vector of row indicies for a given pathway
paxtoolsr documentation built on Nov. 8, 2020, 8:29 p.m.
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Description Usage Arguments Details Value
View source: R/splitSifnxByPathway.R
Description
Splits SIFNX entries into individual pathways
Usage
1 | splitSifnxByPathway(edges, parallel = FALSE)
|
Arguments
edges |
a data.frame with SIF content with the additional column "PATHWAY_NAMES". "PATHWAY_NAMES" should include pathway names delimited with a semi-colon: ";". |
parallel |
a boolean that will parallelize the process; requires foreach/doSNOW/parallel packages |
Details
This method can be slow; ~1.5 minutes for 150K+ rows. Has a parallelized method to speed things up.
Value
a list of where each entry is a vector of row indicies for a given pathway
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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