summarizeSif: Summarize a SIF Network
In paxtoolsr: PaxtoolsR: Access Pathways from Multiple Databases through BioPAX and Pathway Commons
Description
Usage
Arguments
Value
Examples
Description
Summarize a SIF Network
Usage
1
summarizeSif(sif)
Arguments
sif
a binary SIF as a data.frame with three columns:
"PARTICIPANT_A", "INTERACTION_TYPE", "PARTICIPANT_B"
Value
a list containing a count of the unique genes in the SIF and counts for the interaction types in the network
Examples
1
2
results <- readSif(system.file("extdata", "test_sif.txt", package="paxtoolsr"))
summarizeSif(results)
paxtoolsr documentation built on Nov. 8, 2020, 8:29 p.m.
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Description Usage Arguments Value Examples
Description
Summarize a SIF Network
Usage
1 | summarizeSif(sif)
|
Arguments
sif |
a binary SIF as a data.frame with three columns: "PARTICIPANT_A", "INTERACTION_TYPE", "PARTICIPANT_B" |
Value
a list containing a count of the unique genes in the SIF and counts for the interaction types in the network
Examples
1 2 | results <- readSif(system.file("extdata", "test_sif.txt", package="paxtoolsr"))
summarizeSif(results)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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