pcGraphQueries: Acceptable Pathway Commons Graph Queries
In paxtoolsr: PaxtoolsR: Access Pathways from Multiple Databases through BioPAX and Pathway Commons

A simple function to see valid options

1	pcGraphQueries()

COMMONSTREAM searches common downstream or common upstream of a specified set of entities based on the given directions within the boundaries of a specified length limit
NEIGHBORHOOD searches the neighborhood of given source set of nodes
PATHSBETWEEN finds the paths between specific source set of states or entities within the boundaries of a specified length limit
PATHSFROMTO finds the paths from a specific source set of states or entities to a specific target set of states or entities within the boundaries of a specified length limit

acceptable Pathway Commons graph queries

1	pcGraphQueries()

paxtoolsr documentation built on Nov. 8, 2020, 8:29 p.m.

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Using PaxtoolsR: A BioPAX and Pathway Commons Tutorial in R

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