toSifnx: Converts BioPAX OWL file to extended binary SIF...

Description Usage Arguments Details Value Examples

Description

Converts BioPAX OWL file to extended binary SIF representation

Usage

1
toSifnx(inputFile, outputFile = tempfile())

Arguments

inputFile

a string with the name of the input BioPAX OWL file

outputFile

a string with the name of the output file for SIFNX information

Details

Information on SIF conversion is provided on the Pathway Commons site: http://www.pathwaycommons.org/pc2/

Value

see readSifnx()

Examples

1
2
inputFile <- system.file("extdata", "raf_map_kinase_cascade_reactome.owl", package="paxtoolsr")
results <- toSifnx(inputFile=inputFile) 


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