Biocview "aCGH"

Affymetrix SNP Probe-Summarization using Non-Negative Matrix Factorization

Analysis of Large Affymetrix Microarray Data Sets

Analysis of Parent-Specific DNA Copy Numbers

An R package for copy number data segmentation

A package for survival time prediction based on a piecewise baseline hazard Cox regression model.

Bayesian Piecewise Constant Regression for DNA copy number estimation

Chromosome Instability Index

Clonality testing

Comprehensive Pipeline for Analyzing and Visualizing Array-Based CGH Data

Copy-Number Analysis of Large Microarray Data Sets

Copy Number study and Segmentation for multivariate biological data

Core Methods and Classes Used by 'aroma.*' Packages Part of the Aroma Framework

GAIA: An R package for genomic analysis of significant chromosomal aberrations.

Gene Break Detection

High-Throughput Sequence Analysis using the Aroma Framework

Improved Allele-Specific Copy Number of SNP Microarrays for Downstream Segmentation

Multi sample aCGH analysis package using kernel convolution

Objective Assessment of Copy-Number Estimates

Pairwise INTegration of functional genomics data

Post-normalization of total copy numbers

rcellminer: Molecular Profiles, Drug Response, and Chemical Structures for the NCI-60 Cell Lines

Segmentation of single- and multi-track copy number data by penalized least squares regression.

Segmentation of single- and multi-track copy number data by penalized least squares regression (with hg38 and mm10).

Semi-supervised adaptive-height snipping of the Hierarchical Clustering tree

Statistics for Integrative Genomics Analyses in R

VegaMC: A Package Implementing a Variational Piecewise Smooth Model for Identification of Driver Chromosomal Imbalances in Cancer