GOTermBPOnLevel: GO biological process (BP) terms level getter

In GOxploreR: Structural Exploration of the Gene Ontology (GO) Knowledge Base

GO biological process (BP) terms level getter

Description

Gets the level of a GO biological process (BP) term based on the directed acyclic graph (DAG).

Usage

GOTermBPOnLevel(goterm)

Arguments

goterm

An object of class character. A character string of GO biological process (BP) term id. The object can be a GO-term or a vector of GO-terms

Value

A two-column matrix of the GO-terms and the level they map to

Note

The Gene Ontology (GO) biological process (BP) tree was built using the root node "GO:0001850"

Examples

# A vector of biological process GO terms
goterms <- c("GO:0006805","GO:0009083","GO:0006631")

GOTermBPOnLevel(goterms)

GOTermBPOnLevel("GO:0006629")

GOxploreR documentation built on April 11, 2025, 6:05 p.m.