Level2GOTermMF: GO molecular function (MF) terms on a level

Description Usage Arguments Value Note Examples

View source: R/gotermlevelmf.R

Description

Gets all the molecular function (MF) GO-terms on a GO-level. The supported organisms are "Homo sapiens / Human", "Rattus norvegicus / Rat", "Mus musculus / Mouse", "Danio rerio / Zebrafish", "Caenorhabditis elegans / Worm" ,"Arabidopsis thaliana / Cress", "Saccharomyces cerevisiae / Yeast", "Schizosaccharomyces pombe / Fission yeast", "Drosophila melanogaster / Fruit fly", "Escherichia coli / E.coli".

Usage

1
Level2GOTermMF(level, organism = NULL)

Arguments

level

A numeric value for the GO-level

organism

The organism of interest. If NULL the results will be from the general GO MF tree

Value

A list of GO-terms from the level

Note

The Gene Ontology (GO) molecular function (MF) tree was built using the root node GO:0003674

Examples

1
2
3
4
5
# Gene association GO-terms for organism Mouse on level 9
Level2GOTermMF(level = 9, organism = "mouse")

# Gene association GO-terms for organism Zebrafish on level 10
Level2GOTermMF(level = 10, organism = "zebrafish")

GOxploreR documentation built on Dec. 11, 2021, 9:48 a.m.