GetLeafNodesBP: All the BP GO-DAG leaf nodes

In GOxploreR: Structural Exploration of the Gene Ontology (GO) Knowledge Base

All the BP GO-DAG leaf nodes

Description

Returns all the leaf nodes from a particular organism-specific GO-DAG. If empty (or if "BP"), all the general BP GO-DAG leaf nodes will be returned. The supported organism are "Homo sapiens / Human", "Rattus norvegicus / Rat", "Mus musculus / Mouse", "Danio rerio / Zebrafish", "Caenorhabditis elegans / Worm" ,"Arabidopsis thaliana / Cress", "Saccharomyces cerevisiae / Yeast", "Schizosaccharomyces pombe / Fission yeast", "Drosophila melanogaster / Fruit fly", "Escherichia coli / E.coli".

Usage

GetLeafNodesBP(organism = NULL)

Arguments

organism

An object of class character that represents an organism

Value

A two-coloum matrix of all the leaf nodes in the organism-specific DAG and their respective levels

Examples

# General GO BP leaf nodes
GetLeafNodesBP("BP")

# Human BP GO-DAG leaf nodes
GetLeafNodesBP(organism = "Human")

# Mouse BP GO-DAG leaf nodes
GetLeafNodesBP(organism = "DANIO RERIO")

GOxploreR documentation built on Nov. 3, 2023, 5:08 p.m.