Level2GOTermCC: GO cellular component (CC) terms on a level

Description Usage Arguments Value Note Examples

View source: R/gotermlevelcc.R

Description

Gets all the biological process (CC) GO-terms on a GO-level. The supported organisms are "Homo sapiens / Human", "Rattus norvegicus / Rat", "Mus musculus / Mouse", "Danio rerio / Zebrafish", "Caenorhabditis elegans / Worm" ,"Arabidopsis thaliana / Cress", "Saccharomyces cerevisiae / Yeast", "Schizosaccharomyces pombe / Fission yeast", "Drosophila melanogaster / Fruit fly", "Escherichia coli / E.coli".

Usage

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Level2GOTermCC(level, organism = NULL)

Arguments

level

A numeric value for the GO-level

organism

The organism of interest. If NULL the results will be from the general GO CC tree

Value

A list of GO-terms from the level

Note

The Gene Ontology (GO) cellular component (CC) tree was built using the root node GO:0005575

Examples

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# Gene association GO-terms for organism Rat on level 4
Level2GOTermCC(level = 4, organism = "Rat")

# Gene association GO-terms for the General GO CC tree
Level2GOTermCC(level = 7)

GOxploreR documentation built on Dec. 11, 2021, 9:48 a.m.