Level2GOTermCC: GO cellular component (CC) terms on a level

In GOxploreR: Structural Exploration of the Gene Ontology (GO) Knowledge Base

GO cellular component (CC) terms on a level

Description

Gets all the biological process (CC) GO-terms on a GO-level. The supported organisms are "Homo sapiens / Human", "Rattus norvegicus / Rat", "Mus musculus / Mouse", "Danio rerio / Zebrafish", "Caenorhabditis elegans / Worm" ,"Arabidopsis thaliana / Cress", "Saccharomyces cerevisiae / Yeast", "Schizosaccharomyces pombe / Fission yeast", "Drosophila melanogaster / Fruit fly", "Escherichia coli / E.coli".

Usage

Level2GOTermCC(level, organism = NULL)

Arguments

level	A numeric value for the GO-level
organism	The organism of interest. If NULL the results will be from the general GO CC tree

Value

A list of GO-terms from the level

Note

The Gene Ontology (GO) cellular component (CC) tree was built using the root node GO:0005575

Examples

# Gene association GO-terms for organism Rat on level 4
Level2GOTermCC(level = 4, organism = "Rat")

# Gene association GO-terms for the General GO CC tree
Level2GOTermCC(level = 7)

GOxploreR documentation built on Nov. 3, 2023, 5:08 p.m.