GOTermCCOnLevel: GO cellular component (CC) terms level getter

In GOxploreR: Structural Exploration of the Gene Ontology (GO) Knowledge Base

GO cellular component (CC) terms level getter

Description

Get the level of a GO cellular component (CC) term based on the directed acyclic graph (DAG)

Usage

GOTermCCOnLevel(goterm)

Arguments

goterm

An object of class character. A character string of GO cellular component (CC) terms. The object can be a GO-term or a vector of GO-terms

Value

A two-column matrix of the GO-terms and the level they map to

Note

The Gene Ontology (GO) cellular component (CC) tree was built using the root node "GO:0005575"

Examples

# Cellular component GO terms
goterms <- c("GO:0005634", "GO:0005737", "GO:0016020", "GO:0005743", "GO:0005739",
"GO:0005759", "GO:0005829")

GOTermCCOnLevel(goterms)

GOTermCCOnLevel("GO:0005730")

GOxploreR documentation built on April 11, 2025, 6:05 p.m.