Level2NoLeafNodeBP: Non-leaf GO-terms on a GO BP level

In GOxploreR: Structural Exploration of the Gene Ontology (GO) Knowledge Base

Non-leaf GO-terms on a GO BP level

Description

This function returns all the non-leaf GO-terms on a particular GO BP level. The supported organism are "Homo sapiens / Human", "Rattus norvegicus / Rat", "Mus musculus / Mouse", "Danio rerio / Zebrafish", "Caenorhabditis elegans / Worm", "Arabidopsis thaliana / Cress", "Saccharomyces cerevisiae / Yeast", "Schizosaccharomyces pombe / Fission yeast", "Drosophila melanogaster / Fruit fly", "Escherichia coli / E.coli"

Usage

Level2NoLeafNodeBP(level, organism = NULL)

Arguments

level	A numeric value for the GO-level
organism	The organism of interest from the list of supported organism. If NULL the results are from the general GO-DAG (default)

Value

A set of non-leaf GO-terms

Examples

# Non-leaf nodes from level 13 GO-DAG
Level2NoLeafNodeBP(13)

# Non-leaf nodes from level 3 for Rat BP GO-DAG
Level2NoLeafNodeBP(3, "Rattus norvegicus")

GOxploreR documentation built on Nov. 3, 2023, 5:08 p.m.