Level2GOTermBP: GO biological process (BP) terms on a level

In GOxploreR: Structural Exploration of the Gene Ontology (GO) Knowledge Base

GO biological process (BP) terms on a level

Description

Gets all the biological process (BP) GO-terms on a GO-level. The supported organisms are "Homo sapiens / Human", "Rattus norvegicus / Rat", "Mus musculus / Mouse", "Danio rerio / Zebrafish", "Caenorhabditis elegans / Worm" ,"Arabidopsis thaliana / Cress", "Saccharomyces cerevisiae / Yeast", "Schizosaccharomyces pombe / Fission yeast", "Drosophila melanogaster / Fruit fly", "Escherichia coli / E.coli".

Usage

Level2GOTermBP(level, organism = NULL)

Arguments

level	A numeric value for the GO-level
organism	The organism of interest. If NULL the results will be from the general GO BP tree

Value

A list of GO-terms from the level

Note

The Gene Ontology (GO) biological process (BP) tree was built using the root node GO:0001850

Examples

# Gene association GO-terms for organism Yeast on level 6
Level2GOTermBP(level = 6, organism = "Yeast")

# Gene association GO-terms for organism Fruit fly on level 2
Level2GOTermBP(level = 2, organism = "Fruit fly")

GOxploreR documentation built on Nov. 3, 2023, 5:08 p.m.