Level2NoLeafNodeCC: Non-leaf GO-terms on a GO CC level

In GOxploreR: Structural Exploration of the Gene Ontology (GO) Knowledge Base

Non-leaf GO-terms on a GO CC level

Description

This function returned all the non-leaf GO terms on a particular GO CC level. The supported organism are "Homo sapiens / Human", "Rattus norvegicus / Rat", "Mus musculus / Mouse", "Danio rerio / Zebrafish", "Caenorhabditis elegans / Worm" ,"Arabidopsis thaliana / Cress", "Saccharomyces cerevisiae / Yeast", "Schizosaccharomyces pombe / Fission yeast", "Drosophila melanogaster / Fruit fly", "Escherichia coli / E.coli"

Usage

Level2NoLeafNodeCC(level, organism = NULL)

Arguments

level	A numeric value for the GO level
organism	The organism of interest from the list of supported organism. If NULL the results are from the general GO-DAG (default)

Value

A set of non-leaf GO terms

Examples

# Non-leaf nodes from level 16 for Yeast CC GO-DAG
Level2NoLeafNodeCC(level = 16, "Yeast")

# Non-leaf nodes from level 10 for Mouse CC GO-DAG
Level2NoLeafNodeCC( 10, "Mus musculus")

GOxploreR documentation built on April 11, 2025, 6:05 p.m.