Level2LeafNodeBP: GO biological process (BP) level leaf nodes getter

Description Usage Arguments Value Examples

View source: R/degreeDistBP.R

Description

Derive all the leaf nodes from a GO BP level. The supported organism are "Homo sapiens / Human", "Rattus norvegicus / Rat", "Mus musculus / Mouse", "Danio rerio / Zebrafish", "Caenorhabditis elegans / Worm", "Arabidopsis thaliana / Cress", "Saccharomyces cerevisiae / Yeast", "Schizosaccharomyces pombe / Fission yeast", "Drosophila melanogaster / Fruit fly", "Escherichia coli / E.coli".

Usage

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Level2LeafNodeBP(level, organism = NULL)

Arguments

level

A numeric value for the GO-level

organism

An organism of interest from the list of supported organism. If the parameter is NULL the results are from the general GO-DAG (default).

Value

All leaf nodes on the level.

Examples

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# level 2 leaf nodes for Drosophila melanogaster GO-DAG
Level2LeafNodeBP(2, "Drosophila melanogaster")

# level 10 leaf nodes for Drosophila melanogaster GO-DAG
Level2LeafNodeBP(10, "Drosophila melanogaster")

GOxploreR documentation built on Dec. 11, 2021, 9:48 a.m.