Level2RegularNodeMF: Regular nodes from a GO MF level

In GOxploreR: Structural Exploration of the Gene Ontology (GO) Knowledge Base

Regular nodes from a GO MF level

Description

The function retrieves the Regular nodes (RNs) from a GO-level. RNs are those GO-terms which have all their children in the next GO-level (i.e level = level of parent + 1). If the optional parameter "organism" is missing then the result will be from the general GO tree instead of from a particular organism. The supported organisms are "Homo sapiens / Human", "Rattus norvegicus / Rat", "Mus musculus / Mouse", "Danio rerio / Zebrafish", "Caenorhabditis elegans / Worm" ,"Arabidopsis thaliana / Cress", "Saccharomyces cerevisiae / Yeast", "Schizosaccharomyces pombe / Fission yeast", "Drosophila melanogaster / Fruit fly", "Escherichia coli / E.coli".

Usage

Level2RegularNodeMF(level, organism = NULL)

Arguments

level	A numeric value for the GO-level
organism	Organism of interest that is supported by the package

Value

Regular nodes from the GO-level

Examples

# Regular nodes on level 3
Level2RegularNodeMF(level = 3, organism = "Human" )

# Regular nodes on level 6
Level2RegularNodeMF(level = 6, organism = "MUS MUSCULUS" )

GOxploreR documentation built on Nov. 3, 2023, 5:08 p.m.