Level2JumpNodeCC: Jump nodes from a GO CC level

In GOxploreR: Structural Exploration of the Gene Ontology (GO) Knowledge Base

Jump nodes from a GO CC level

Description

The function retrieves the Jump nodes (JNs) from a GO-level. JNs are those GO-terms which have at least one child term not present in the level below it. If the optional parameter "organism" is missing then the result are from the general GO tree. The supported organisms are "Homo sapiens / Human", "Rattus norvegicus / Rat", "Mus musculus / Mouse", "Danio rerio / Zebrafish", "Caenorhabditis elegans / Worm" ,"Arabidopsis thaliana / Cress", "Saccharomyces cerevisiae / Yeast", "Schizosaccharomyces pombe / Fission yeast", "Drosophila melanogaster / Fruit fly", "Escherichia coli / E.coli".

Usage

Level2JumpNodeCC(level, organism = NULL)

Arguments

level	A numeric value for the GO-level
organism	Organism of interest that is supported by the package

Value

All jump nodes from the level

Examples

# Jump nodes on level 5
Level2JumpNodeCC(level = 5, organism = "Saccharomyces cerevisiae" )

# Jump nodes on level 3
Level2JumpNodeCC(level = 3, organism = "Schizosaccharomyces pombe" )

GOxploreR documentation built on Nov. 3, 2023, 5:08 p.m.