Description Usage Arguments Details Author(s) See Also
This function contains a set of functions for training of motif discovery algorithms. Specifically, the motif discovery algorithms are ITEME, MEME, MDscan, MATCH and Qresiduals.
1 | ConstructModel(iicc, TF)
|
iicc |
Set of initial conditions for the MEET-package: mode, method, background,alignment,threshold,parameters,Transcriptionfactor,nummotif,lenmotif,sentit,position,missing,vector,gapopen,maxiters,gapextend |
TF |
A set of nucleotide sequences |
This function has two output: validation scores and ROC curve.
Erola Pairo <epeiroatibec.pcb.ub.es> and Joan Maynou <joan.maynouatupc.edu>
MEET, detection
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