align.MEME: Multiple sequence alignment by means of MEME.
In MEET: MEET: Motif Elements Estimation Toolkit
Description
Usage
Arguments
Details
Value
Author(s)
See Also
Description
DNA sequences are aligned by means of MEME Version 4.4.0. (Multiple Expectation-Maximization for Motif Elicitation)
Usage
1
align.MEME(filein, fileout = "Sq.fa", iicc)
Arguments
filein
A set of nucleotide sequences in FASTA format.
fileout
Output file in FASTA format
iicc
A list of argument input.
Details
This function needs aaMI-package.
This funtions works with meme<=4.3.0
Value
Output is a file in FASTA format with aligned nucleotide sequences.
Author(s)
Erola Pairo <epeiroatibec.pcb.ub.es> and Joan Maynou <joan.maynouatupc.edu>
See Also
align.clustalw, align.MUSCLE
MEET documentation built on May 2, 2019, 1:45 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Details Value Author(s) See Also
Description
DNA sequences are aligned by means of MEME Version 4.4.0. (Multiple Expectation-Maximization for Motif Elicitation)
Usage
1 | align.MEME(filein, fileout = "Sq.fa", iicc)
|
Arguments
filein |
A set of nucleotide sequences in FASTA format. |
fileout |
Output file in FASTA format |
iicc |
A list of argument input. |
Details
This function needs aaMI-package. This funtions works with meme<=4.3.0
Value
Output is a file in FASTA format with aligned nucleotide sequences.
Author(s)
Erola Pairo <epeiroatibec.pcb.ub.es> and Joan Maynou <joan.maynouatupc.edu>
See Also
align.clustalw, align.MUSCLE
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.