joint.probability: Joint Probability
In MEET: MEET: Motif Elements Estimation Toolkit
Description
Usage
Arguments
Author(s)
See Also
Examples
Description
This function calculates the joint probability of each base-couple among two positions of the training.set
Usage
1
joint.probability(training.set,Prob,Probtrans)
Arguments
training.set
A set of aligned nucleotide sequence
Prob
Background probability of each base within genome
Probtrans
Background probability of correlation among bases within genome
Author(s)
Joan Maynou <joan.maynouatupc.edu>
See Also
probability
Examples
1
2
3
4
5
6
require("MEET")
data(TranscriptionFactor)
data(BackgroundOrganism)
training.set<-TranscriptionFactor
Probtrans<-probability.couple(Prob)
pmXY<-joint.probability(training.set, Prob,Probtrans)
MEET documentation built on May 2, 2019, 1:45 p.m.
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Description Usage Arguments Author(s) See Also Examples
Description
This function calculates the joint probability of each base-couple among two positions of the training.set
Usage
1 | joint.probability(training.set,Prob,Probtrans)
|
Arguments
training.set |
A set of aligned nucleotide sequence |
Prob |
Background probability of each base within genome |
Probtrans |
Background probability of correlation among bases within genome |
Author(s)
Joan Maynou <joan.maynouatupc.edu>
See Also
probability
Examples
1 2 3 4 5 6 | require("MEET")
data(TranscriptionFactor)
data(BackgroundOrganism)
training.set<-TranscriptionFactor
Probtrans<-probability.couple(Prob)
pmXY<-joint.probability(training.set, Prob,Probtrans)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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