API for MEET
MEET: Motif Elements Estimation Toolkit
| Global functions | |
|---|---|
| Alignment | Man page |
| BackgroundOrganism | Man page |
| CalculInformation | Man page |
| CalculPSSM | Man page |
| CalculPWM | Man page |
| CalculRedundancy | Man page |
| CalculScores | Man page |
| CalculSimilarity | Man page |
| ConstructModel | Man page |
| CreateConsensus | Man page |
| DivergenceDROSOPHILA | Man page |
| DivergenceHOMO | Man page |
| DivergenceMUS | Man page |
| DivergenceRATTUS | Man page |
| EntropyDROSOPHILA | Man page |
| EntropyHOMO | Man page |
| EntropyMUS | Man page |
| EntropyRATTUS | Man page |
| Hmemory | Man page |
| Hread | Man page |
| JacksonParameters | Man page |
| MEET | Man page |
| MImemory | Man page |
| MIread | Man page |
| Model-class | Man page |
| ModelDivergence | Man page |
| ModelEntropy | Man page |
| ModelMATCH | Man page |
| ModelMDscan | Man page |
| ModelMEME | Man page |
| ModelPCA | Man page |
| Models | Man page |
| ModeltransMEME | Man page |
| PCanalysis | Man page |
| PredictDivergence | Man page |
| PredictEntropy | Man page |
| PredictMATCH | Man page |
| PredictMDscan | Man page |
| PredictMEME | Man page |
| PredictPCA | Man page |
| Prediction | Man page |
| PredicttransMEME | Man page |
| Prob | Man page |
| QresidualsDROSOPHILA | Man page |
| QresidualsHOMO | Man page |
| QresidualsMUS | Man page |
| QresidualsRATTUS | Man page |
| QtoJackson | Man page |
| ROCmodel | Man page |
| Read.aligned | Man page |
| ReadSequence | Man page |
| Sequence | Man page |
| TFlogodds | Man page |
| TranscriptionFactor | Man page |
| align.MEME | Man page |
| align.clustalw | Man page |
| align.muscle | Man page |
| chooseModel | Man page |
| classMODEL | Man page |
| correction-class | Man page |
| correction.entropy | Man page |
| correction.redundancy | Man page |
| correctionaprox | Man page |
| detection | Man page |
| detector_1rOrdre_diff | Man page |
| detector_2nOrdre | Man page |
| detector_2nOrdre_init | Man page |
| diffInstructions | Man page |
| divergence.Renyi | Man page |
| divergence.Shannon | Man page |
| entropy.Renyi | Man page |
| entropy.Shannon | Man page |
| entropy.corrected | Man page |
| entropy.joint | Man page |
| iicc | Man page |
| joint.probability | Man page |
| kfold.Divergence | Man page |
| kfold.Entropy | Man page |
| kfold.MATCH | Man page |
| kfold.MDscan | Man page |
| kfold.MEME | Man page |
| kfold.PCA | Man page |
| kfold.transMEME | Man page |
| motif.mast | Man page |
| numericalDNA | Man page |
| organism | Man page |
| probability | Man page |
| probability.couple | Man page |
| pvalue | Man page |
| q | Man page |
| read.mast | Man page |
| readMEME | Man page |
| redundancy | Man page |
| run.read.MDscan | Man page |
| scoreMDscan | Man page |
| standardout | Man page |
| writeMEME | Man page |
| writeResultsHTML | Man page |
