PredictEntropy: PredictEntropy: Detection of Transcription Factor Binding...
In MEET: MEET: Motif Elements Estimation Toolkit
Description
Usage
Arguments
Details
Author(s)
See Also
Examples
Description
Detection of transcription factor binding sites through parametric uncertainty measurement (Renyi entropy). This detection algorithm evaluates the variation on the total Renyi entropy of a set of sequences when a candidate sequence is assumed to be a true binding site belonging to the set.
Usage
1
Arguments
iicc
A set of inicial conditions for the MEET-package (mode, method, background, alignment, threshold, parameters, Transcriptionfactor, nummotif, lenmotif, sentit, position, missing, vector, gapopen, maxiters, gapextend)
Details
This function contains a set of function for the detection of transcription factor binding sites:correction.entropy.R,
correction.redundancy.R, entropy.R entropy.max.R, entropy.corrected.R, probability.R, CalculRedundancy.R, diff.instructions.R, redundancy.R, ROC.R, detector_1rOrdre_diff.R, pvalue.R
Author(s)
Joan Maynou <joan.maynouatupc.edu>
See Also
PredictDivergence, PredictMEME, PredictMDscan, PredictPCA, PredictMATCH
Examples
1
2
3
require("MEET")
data(iicc)
PredictEntropy(iicc)
MEET documentation built on May 2, 2019, 1:45 p.m.
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Description Usage Arguments Details Author(s) See Also Examples
Description
Detection of transcription factor binding sites through parametric uncertainty measurement (Renyi entropy). This detection algorithm evaluates the variation on the total Renyi entropy of a set of sequences when a candidate sequence is assumed to be a true binding site belonging to the set.
Usage
1 |
Arguments
iicc |
A set of inicial conditions for the MEET-package (mode, method, background, alignment, threshold, parameters, Transcriptionfactor, nummotif, lenmotif, sentit, position, missing, vector, gapopen, maxiters, gapextend) |
Details
This function contains a set of function for the detection of transcription factor binding sites:correction.entropy.R, correction.redundancy.R, entropy.R entropy.max.R, entropy.corrected.R, probability.R, CalculRedundancy.R, diff.instructions.R, redundancy.R, ROC.R, detector_1rOrdre_diff.R, pvalue.R
Author(s)
Joan Maynou <joan.maynouatupc.edu>
See Also
PredictDivergence, PredictMEME, PredictMDscan, PredictPCA, PredictMATCH
Examples
1 2 3 | require("MEET")
data(iicc)
PredictEntropy(iicc)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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