Description Usage Arguments Details Author(s) See Also Examples
Detection of transcription factor binding sites through parametric uncertainty measurement (Renyi entropy). This detection algorithm evaluates the variation on the total Renyi entropy of a set of sequences when a candidate sequence is assumed to be a true binding site belonging to the set.
1 |
iicc |
A set of inicial conditions for the MEET-package (mode, method, background, alignment, threshold, parameters, Transcriptionfactor, nummotif, lenmotif, sentit, position, missing, vector, gapopen, maxiters, gapextend) |
This function contains a set of function for the detection of transcription factor binding sites:correction.entropy.R, correction.redundancy.R, entropy.R entropy.max.R, entropy.corrected.R, probability.R, CalculRedundancy.R, diff.instructions.R, redundancy.R, ROC.R, detector_1rOrdre_diff.R, pvalue.R
Joan Maynou <joan.maynouatupc.edu>
PredictDivergence, PredictMEME, PredictMDscan, PredictPCA, PredictMATCH
1 2 3 | require("MEET")
data(iicc)
PredictEntropy(iicc)
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