Alignment: To line up Transcription Factor Binding sites through...

In MEET: MEET: Motif Elements Estimation Toolkit

Description

This function, Alignment, lines up Transcription Factor Binding Sites, TFBS, through MSA. There are different kinds of MSA: MEME, Clustalw and Muscle

Usage

Alignment(TF,iicc)

Arguments

TF	Transcription Factor
iicc	A set of initial conditions for the MEET-package

Author(s)

Joan Maynou <joan.maynouatupc.edu> and Erola Pairo <epeiroatibec.pcb.ub.es>

Examples

require("MEET")
data(iicc)
pathMEET <- system.file("sequences", package = "MEET")
Alignment(TF=paste(pathMEET, "AP1.fa", sep = "/"),iicc)

MEET documentation built on May 2, 2019, 1:45 p.m.