For a vector of Core cut values this function calculates returns a matrix of Similarities and labels indicating if a sequence position is a binding site or not. To calculate the Similartiy a leave-one-out cross validation model is used. With the utput of this function a ROC curve can be calculated for each Core Similarity and the results can be compared.
List of options described in the MEET program
Erola Pairo <epeiroatibec.pcb.ub.es>
A.E. Kel , E. Gossling , I. Reuter , E. Cheremushkin , O.V. Kel-Margoulis , and E. Wingender MATCHTM: a tool for searching transcription factor binding sites in DNA sequences Nucl. Acids Res. 31: 3576-3579.
1 2 3 4 5 6 7 8
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.