detection: Detection: A set of functions for detection of TFBS

In MEET: MEET: Motif Elements Estimation Toolkit

Description

This function contains a set of functions for detection of Transcription Factor Binding Sites. Specifically, motif discovery algorithms are ITEME, MEME, MDscan, MATCH and Qresiduals.

Usage

detection(iicc)

Arguments

iicc	Set of initial conditions for the MEET-package: mode, method, background,alignment,pvalor,parameters,Transcriptionfactor, nummotif,lenmotif,sentit,position,missing,vector,gapopen, maxiters,gapextend

Details

The main parameter is method ( a set of motif discovery algorithms: ITEME(Entropy, divergence), Q-residuals, MEME, Match and MDscan)

Author(s)

Erola Pairo <epeiroatibec.pcb.ub.es> and Joan Maynou <joan.maynouatupc.edu>

See Also

MEET, ConstructModel

Examples

require("MEET")
data(iicc)
detection(iicc)

MEET documentation built on May 2, 2019, 1:45 p.m.