Description Usage Arguments Details Author(s) See Also Examples
This function contains a set of functions for detection of Transcription Factor Binding Sites. Specifically, motif discovery algorithms are ITEME, MEME, MDscan, MATCH and Qresiduals.
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iicc |
Set of initial conditions for the MEET-package: mode, method, background,alignment,pvalor,parameters,Transcriptionfactor, nummotif,lenmotif,sentit,position,missing,vector,gapopen, maxiters,gapextend |
The main parameter is method ( a set of motif discovery algorithms: ITEME(Entropy, divergence), Q-residuals, MEME, Match and MDscan)
Erola Pairo <epeiroatibec.pcb.ub.es> and Joan Maynou <joan.maynouatupc.edu>
MEET, ConstructModel
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