correction.redundancy: Correction redundancy from the Finite Sample Size Effect
In MEET: MEET: Motif Elements Estimation Toolkit

Description Usage Arguments Author(s) See Also Examples

Each training matrix is formed by a finite number of samples. The probability estimation error using the nucleotide frequency causes a bias on the uncertainty measurement

1	correction.redundancy(r, HXmax, Herror, finite)

`r`	Length of the binding site
`HXmax`	Maximum entropy for N possible states
`Herror`	Error entropy for finit sample size effect
`finite`	Sample size

Joan Maynou <joan.maynouatupc.edu>

redundancy, entropy,CalculRedundancy, correction.entropy, correctionaprox

require("MEET")
data(TranscriptionFactor)
data(BackgroundOrganism)
data(RenyiOrder)
data(iicc)
Factortrans<-TranscriptionFactor
correction<-correction.entropy(q,p=nrow(Factortrans),long=1,iicc)
Herror<-slot(correction,"Herror")
HXmax<-iicc$HXmax
correction.redundancy(r=1,HXmax,Herror,finite=nrow(TranscriptionFactor))