Files in MEET
MEET: Motif Elements Estimation Toolkit

MD5
src
src/readH.c
src/probabilitycouple.c
src/probability.c
src/powX2.c
src/powRenyi.c
src/PCAdetection.c
src/modelgetList.h
src/missingfun.c
src/MI.c
src/loopENTROPY.c
src/loopDIVERGENCE.c
src/jointprobability.c
src/getListElement.c
src/entropyShannon.c
src/entropyRenyi.c
src/entropycorrected.c
src/divergenceShannon.c
src/correctionredundancy.c
src/correctionentropy.c
R
R/writeResultsHTML.R R/writeMEME.R R/standardout.R R/scoreMDscan.R R/run.read.MDscan.R R/ROCmodel.R R/redundancy.R R/ReadSequence.R R/readMEME.R R/read.mast.R R/Read.aligned.R R/QtoJackson.R R/QresidualsRATTUS.R R/QresidualsMUS.R R/QresidualsHOMO.R R/QresidualsDROSOPHILA.R R/pvalue.R R/probability.R R/probability.couple.R R/PredicttransMEME.R R/PredictPCA.R R/PredictMEME.R R/PredictMDscan.R R/PredictMATCH.R R/Prediction.R R/PredictEntropy.R R/PredictDivergence.R R/PCanalysis.R R/numericalDNA.R R/motif.mast.R R/ModeltransMEME.R R/Models.R R/ModelPCA.R R/ModelMEME.R R/ModelMDscan.R R/ModelMATCH.R R/ModelEntropy.R R/ModelDivergence.R R/Model.R R/MIread.R R/MImemory.R R/MEET.R R/kfold.transMEME.R R/kfold.PCA.R R/kfold.MEME.R R/kfold.MDscan.R R/kfold.MATCH.R R/kfold.Entropy.R R/kfold.Divergence.R R/joint.probability.R R/JacksonParameters.R R/Hread.R R/Hmemory.R R/EntropyRATTUS.R R/EntropyMUS.R R/EntropyHOMO.R R/EntropyDROSOPHILA.R R/entropy.Shannon.R R/entropy.Renyi.R R/entropy.joint.R R/entropy.corrected.R R/DivergenceRATTUS.R R/DivergenceMUS.R R/DivergenceHOMO.R R/DivergenceDROSOPHILA.R R/divergence.Shannon.R R/divergence.Renyi.R R/diffInstructions.R R/detector_2nOrdre_init.R R/detector_2nOrdre.R R/detector_1rOrdre_diff.R R/detection.R R/CreateConsensus.R R/correctionaprox.R R/correction.redundancy.R R/correction.R R/correction.entropy.R R/ConstructModel.R R/classMODEL.R R/chooseModel.R R/CalculSimilarity.R R/CalculScores.R R/CalculRedundancy.R R/CalculPWM.R R/CalculPSSM.R R/CalculInformation.R R/Alignment.R R/align.muscle.R R/align.MEME.R R/align.clustalw.R
NAMESPACE
man
man/writeResultsHTML.Rd man/writeMEME.Rd man/TranscriptionFactor.Rd man/TFlogodds.Rd man/standardout.Rd man/Sequence.Rd man/scoreMDscan.Rd man/run.read.MDscan.Rd man/ROCmodel.Rd man/redundancy.Rd man/ReadSequence.Rd man/readMEME.Rd man/read.mast.Rd man/Read.aligned.Rd man/QtoJackson.Rd man/QresidualsRATTUS.Rd man/QresidualsMUS.Rd man/QresidualsHOMO.Rd man/QresidualsDROSOPHILA.Rd man/q.Rd man/pvalue.Rd man/probability.Rd man/probability.couple.Rd man/Prob.Rd man/PredicttransMEME.Rd man/PredictPCA.Rd man/PredictMEME.Rd man/PredictMDscan.Rd man/PredictMATCH.Rd man/Prediction.Rd man/PredictEntropy.Rd man/PredictDivergence.Rd man/PCanalysis.Rd man/organism.Rd man/numericalDNA.Rd man/motif.mast.Rd man/ModeltransMEME.Rd man/Models.Rd man/ModelPCA.Rd man/ModelMEME.Rd man/ModelMDscan.Rd man/ModelMATCH.Rd man/ModelEntropy.Rd man/ModelDivergence.Rd man/Model.Rd man/MIread.Rd man/MImemory.Rd man/MEET.Rd man/kfold.transMEME.Rd man/kfold.PCA.Rd man/kfold.MEME.Rd man/kfold.MDscan.Rd man/kfold.MATCH.Rd man/kfold.Entropy.Rd man/kfold.Divergence.Rd man/joint.probability.Rd man/JacksonParameters.Rd man/iicc.Rd man/Hread.Rd man/Hmemory.Rd man/EntropyRATTUS.Rd man/EntropyMUS.Rd man/EntropyHOMO.Rd man/EntropyDROSOPHILA.Rd man/entropy.Shannon.Rd man/entropy.Renyi.Rd man/entropy.joint.Rd man/entropy.corrected.Rd man/DivergenceRATTUS.Rd man/DivergenceMUS.Rd man/DivergenceHOMO.Rd man/DivergenceDROSOPHILA.Rd man/divergence.Shannon.Rd man/divergence.Renyi.Rd man/diffInstructions.Rd man/detector_2nOrdre_init.Rd man/detector_2nOrdre.Rd man/detector_1rOrdre_diff.Rd man/detection.Rd man/CreateConsensus.Rd man/correctionaprox.Rd man/correction.redundancy.Rd man/correction.Rd man/correction.entropy.Rd man/ConstructModel.Rd man/classMODEL.Rd man/chooseModel.Rd man/CalculSimilarity.Rd man/CalculScores.Rd man/CalculRedundancy.Rd man/CalculPWM.Rd man/CalculPSSM.Rd man/CalculInformation.Rd man/BackgroundOrganism.Rd man/Alignment.Rd man/align.muscle.Rd man/align.MEME.Rd man/align.clustalw.Rd
inst
inst/sequences
inst/sequences/FOXO301.fasta
inst/sequences/DNAtostudy.fa
inst/sequences/DNAmeet.afa
inst/sequences/DNAhomo.fa
inst/sequences/AP1.fa
exec
exec/webmeet.js
exec/webmeet.csa.css
exec/LogoMEET.png
exec/jquery.js
exec/jquery.cluetip.js
exec/jquery.cluetip.csa.css
exec/jquery-ui-1.8.20.custom.min.js
exec/jquery-ui-1.8.20.custom.csa.css
DESCRIPTION
data
data/TranscriptionFactor.rda
data/TFlogodds.rda
data/Sequence.rda
data/RenyiOrder.rda
data/RattusQresiduals.rda
data/RattusEntropy.rda
data/RattusDivergence.rda
data/organism.rda
data/MusQresiduals.rda
data/MusEntropy.rda
data/MusDivergence.rda
data/iicc.rda
data/HomoQresiduals.rda
data/HomoEntropy.rda
data/HomoDivergence.rda
data/DrosophilaQresiduals.rda
data/DrosophilaEntropy.rda
data/DrosophilaDivergence.rda
data/datalist
data/BackgroundOrganism.rda
MEET documentation built on May 30, 2017, 4:56 a.m.