Files in MEET
MEET: Motif Elements Estimation Toolkit
MD5
DESCRIPTION
NAMESPACE
inst/sequences/AP1.fa
inst/sequences/DNAtostudy.fa
inst/sequences/DNAhomo.fa
inst/sequences/DNAmeet.afa
inst/sequences/FOXO301.fasta
exec/jquery.js
exec/webmeet.js
exec/jquery-ui-1.8.20.custom.csa.css
exec/jquery.cluetip.js
exec/LogoMEET.png
exec/webmeet.csa.css
exec/jquery-ui-1.8.20.custom.min.js
exec/jquery.cluetip.csa.css
R/ModelMDscan.R
R/writeResultsHTML.R
R/EntropyDROSOPHILA.R
R/CreateConsensus.R
R/read.mast.R
R/Hmemory.R
R/CalculScores.R
R/PCanalysis.R
R/MEET.R
R/ModelPCA.R
R/CalculPWM.R
R/ModelMATCH.R
R/standardout.R
R/DivergenceDROSOPHILA.R
R/QresidualsMUS.R
R/QresidualsDROSOPHILA.R
R/writeMEME.R
R/kfold.transMEME.R
R/scoreMDscan.R
R/CalculRedundancy.R
R/entropy.corrected.R
R/align.MEME.R
R/Alignment.R
R/entropy.joint.R
R/Models.R
R/run.read.MDscan.R
R/kfold.MDscan.R
R/detector_1rOrdre_diff.R
R/kfold.PCA.R
R/detection.R
R/ReadSequence.R
R/Model.R
R/entropy.Shannon.R
R/EntropyRATTUS.R
R/QresidualsRATTUS.R
R/PredictDivergence.R
R/CalculPSSM.R
R/CalculSimilarity.R
R/divergence.Shannon.R
R/DivergenceHOMO.R
R/numericalDNA.R
R/correction.R
R/divergence.Renyi.R
R/QresidualsHOMO.R
R/DivergenceMUS.R
R/kfold.MEME.R
R/PredictEntropy.R
R/detector_2nOrdre.R
R/probability.R
R/EntropyMUS.R
R/MIread.R
R/PredictMATCH.R
R/MImemory.R
R/joint.probability.R
R/classMODEL.R
R/kfold.Divergence.R
R/correctionaprox.R
R/chooseModel.R
R/redundancy.R
R/align.clustalw.R
R/ModelMEME.R
R/motif.mast.R
R/Read.aligned.R
R/CalculInformation.R
R/ModeltransMEME.R
R/PredictMEME.R
R/Hread.R
R/PredictMDscan.R
R/Prediction.R
R/pvalue.R
R/align.muscle.R
R/ConstructModel.R
R/kfold.MATCH.R
R/PredicttransMEME.R
R/PredictPCA.R
R/kfold.Entropy.R
R/EntropyHOMO.R
R/ROCmodel.R
R/ModelEntropy.R
R/DivergenceRATTUS.R
R/diffInstructions.R
R/JacksonParameters.R
R/probability.couple.R
R/readMEME.R
R/correction.redundancy.R
R/ModelDivergence.R
R/entropy.Renyi.R
R/detector_2nOrdre_init.R
R/correction.entropy.R
R/QtoJackson.R
src/probability.c
src/probabilitycouple.c
src/jointprobability.c
src/PCAdetection.c
src/entropycorrected.c
src/powX2.c
src/missingfun.c
src/loopENTROPY.c
src/correctionentropy.c
src/entropyShannon.c
src/readH.c
src/entropyRenyi.c
src/MI.c
src/divergenceShannon.c
src/modelgetList.h
src/powRenyi.c
src/correctionredundancy.c
src/loopDIVERGENCE.c
src/getListElement.c
man/ModeltransMEME.Rd
man/PredictPCA.Rd
man/Sequence.Rd
man/Models.Rd
man/ConstructModel.Rd
man/run.read.MDscan.Rd
man/entropy.joint.Rd
man/ModelPCA.Rd
man/divergence.Renyi.Rd
man/probability.Rd
man/writeResultsHTML.Rd
man/iicc.Rd
man/entropy.corrected.Rd
man/DivergenceHOMO.Rd
man/DivergenceRATTUS.Rd
man/standardout.Rd
man/correction.Rd
man/PCanalysis.Rd
man/ModelEntropy.Rd
man/read.mast.Rd
man/detector_2nOrdre_init.Rd
man/detector_1rOrdre_diff.Rd
man/PredictMEME.Rd
man/DivergenceMUS.Rd
man/CalculSimilarity.Rd
man/align.clustalw.Rd
man/redundancy.Rd
man/kfold.MEME.Rd
man/PredictMATCH.Rd
man/kfold.Divergence.Rd
man/probability.couple.Rd
man/PredictDivergence.Rd
man/Prediction.Rd
man/scoreMDscan.Rd
man/writeMEME.Rd
man/DivergenceDROSOPHILA.Rd
man/CalculPWM.Rd
man/EntropyRATTUS.Rd
man/Hread.Rd
man/MEET.Rd
man/QtoJackson.Rd
man/BackgroundOrganism.Rd
man/EntropyMUS.Rd
man/QresidualsHOMO.Rd
man/Read.aligned.Rd
man/CreateConsensus.Rd
man/CalculScores.Rd
man/QresidualsRATTUS.Rd
man/PredictEntropy.Rd
man/ReadSequence.Rd
man/correction.redundancy.Rd
man/chooseModel.Rd
man/kfold.MATCH.Rd
man/Model.Rd
man/kfold.transMEME.Rd
man/MIread.Rd
man/Alignment.Rd
man/ModelMATCH.Rd
man/ROCmodel.Rd
man/CalculPSSM.Rd
man/EntropyHOMO.Rd
man/Hmemory.Rd
man/PredictMDscan.Rd
man/detection.Rd
man/QresidualsMUS.Rd
man/pvalue.Rd
man/numericalDNA.Rd
man/kfold.MDscan.Rd
man/align.MEME.Rd
man/ModelMEME.Rd
man/joint.probability.Rd
man/correction.entropy.Rd
man/ModelMDscan.Rd
man/TFlogodds.Rd
man/motif.mast.Rd
man/CalculInformation.Rd
man/align.muscle.Rd
man/detector_2nOrdre.Rd
man/kfold.Entropy.Rd
man/kfold.PCA.Rd
man/QresidualsDROSOPHILA.Rd
man/ModelDivergence.Rd
man/TranscriptionFactor.Rd
man/organism.Rd
man/entropy.Renyi.Rd
man/divergence.Shannon.Rd
man/correctionaprox.Rd
man/MImemory.Rd
man/Prob.Rd
man/CalculRedundancy.Rd
man/EntropyDROSOPHILA.Rd
man/JacksonParameters.Rd
man/readMEME.Rd
man/classMODEL.Rd
man/diffInstructions.Rd
man/entropy.Shannon.Rd
man/q.Rd
man/PredicttransMEME.Rd
data/RattusEntropy.rda
data/Sequence.rda
data/RattusDivergence.rda
data/RenyiOrder.rda
data/RattusQresiduals.rda
data/DrosophilaQresiduals.rda
data/MusQresiduals.rda
data/iicc.rda
data/HomoQresiduals.rda
data/MusDivergence.rda
data/TranscriptionFactor.rda
data/HomoEntropy.rda
data/DrosophilaEntropy.rda
data/HomoDivergence.rda
data/MusEntropy.rda
data/organism.rda
data/BackgroundOrganism.rda
data/datalist
data/TFlogodds.rda
data/DrosophilaDivergence.rda
