Hread: To read Entropy values

In MEET: MEET: Motif Elements Estimation Toolkit

Description

This function reads entropy values saved in memory. From the entropy values, Hread calculates the variation of the total entropy when the candidate sequence is added to the set.

Usage

Hread(training.set.mes.rand,val.set,iicc)

Arguments

training.set.mes.rand	A set of nucleotide sequences
val.set	A candidate sequence
iicc	A set of inicial conditions for the MEET-package

Author(s)

Joan Maynou <joan.maynouatupc.edu>

See Also

Hmemory

Examples

require("MEET")
require("seqinr")
write.fasta <- get("write.fasta",pos="package:seqinr")
read.fasta <- get("read.fasta",pos="package:seqinr")
data(iicc)
training.set.mes.rand<-iicc$Transcriptionfactor
val.set<-c("A","T","C","C","G","T","A","T","T","A","C","G")
test<-Hread(training.set.mes.rand, val.set, iicc)

MEET documentation built on May 2, 2019, 1:45 p.m.