diffInstructions: The measurement of the variation of the total redundancy

In MEET: MEET: Motif Elements Estimation Toolkit

Description

This function measures the variation of the total redundancy.

Usage

diffInstructions(training.set, HX, HXmax, Herror, Redundancia_corregida)

Arguments

training.set	A set of aligned nucleotide sequences
HX	Entropy
HXmax	Maximum entropy
Herror	Entropy error. Correction of the Finite Sample Size Effect
Redundancia_corregida	Redundancy correction of the Finite Sample Size Effect

Details

This function depends on detector_1erOrdre_diff

Author(s)

Joan Maynou <joan.maynouatupc.edu>

Examples

require("MEET")
data(iicc)
data(BackgroundOrganism)
q<-iicc$q
training.set<-iicc$Transcriptionfactor
correction<-correction.entropy(q,p=nrow(training.set),long=1,iicc)
Herror<-slot(correction,"Herror")
HXmax<-iicc$HXmax
prob<-probability(training.set,Prob)
HX<-entropy.Shannon(prob)
Redundancia_corregida<-CalculRedundancy(training.set,q,iicc)
test<-diffInstructions (training.set,HX,HXmax,Herror,Redundancia_corregida)

MEET documentation built on May 2, 2019, 1:45 p.m.