kfold.transMEME: Leave-one-out cross-validation for MEME/MAST through...
In MEET: MEET: Motif Elements Estimation Toolkit
Description
Usage
Arguments
Details
Author(s)
See Also
Description
This function does leave-one-out cross-validation for MEME/MAST. In this case, a set of nucleotide sequences is lined up MUSCLE and CLUSTALW. This is main difference between transMEME and MEME.
Usage
1
kfold.transMEME(iicc, TF)
Arguments
iicc
Set of initial conditions for the MEET-package: mode, method, background,alignment,threshold,parameters,Transcriptionfactor,nummotif,lenmotif,sentit,position,missing,vector,gapopen,maxiters,gapextend
TF
A set of nucleotide sequence
Details
This function needs MEME/MAST software.
Author(s)
Erola Pairo <epeiroatibec.pcb.ub.es> and Joan Maynou <joan.maynouatupc.edu>
See Also
MEET, kfold.Entropy, kfold.transMEME,kfoldMEME, kfold.Divergence, kfold.PCA
MEET documentation built on May 2, 2019, 1:45 p.m.
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Description Usage Arguments Details Author(s) See Also
Description
This function does leave-one-out cross-validation for MEME/MAST. In this case, a set of nucleotide sequences is lined up MUSCLE and CLUSTALW. This is main difference between transMEME and MEME.
Usage
1 | kfold.transMEME(iicc, TF)
|
Arguments
iicc |
Set of initial conditions for the MEET-package: mode, method, background,alignment,threshold,parameters,Transcriptionfactor,nummotif,lenmotif,sentit,position,missing,vector,gapopen,maxiters,gapextend |
TF |
A set of nucleotide sequence |
Details
This function needs MEME/MAST software.
Author(s)
Erola Pairo <epeiroatibec.pcb.ub.es> and Joan Maynou <joan.maynouatupc.edu>
See Also
MEET, kfold.Entropy, kfold.transMEME,kfoldMEME, kfold.Divergence, kfold.PCA
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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