entropy.corrected: Correction of the Finite Sample Size Effect
In MEET: MEET: Motif Elements Estimation Toolkit

Description Usage Arguments Details Author(s) See Also Examples

Each training matrix is formed by a finite number of samples. The probability estimation error using the nucleotide frequency causes a bias on the uncertainty measurement

1	entropy.corrected(H, ErrorHX, HXmax)

`H`	Entropy
`ErrorHX`	Error Entropy
`HXmax`	Maximum Entropy

This function uses the results of correction.entropy and correctionaprox functions.

Joan Maynou <joan.maynouatupc.edu>

correctionaprox, correction.entropy

require("MEET")
data(BackgroundOrganism)
data(iicc)
Factortrans<-iicc$Transcriptionfactor
correction<-correction.entropy(q=iicc$q,p=nrow(Factortrans),long=1,iicc)
ErrorHX<-slot(correction,"sderror")[nrow(Factortrans)]
HXmax<-iicc$HXmax
prob<-probability(Factortrans,Prob)
H<-entropy.Shannon(prob)
test<-entropy.corrected(H,ErrorHX,HXmax)