PCanalysis: PC analysis on numerical DNA sequences
In MEET: MEET: Motif Elements Estimation Toolkit
Description
Usage
Arguments
Value
Author(s)
See Also
Description
Performs a PC analysis of numerical DNA sequences, using the pcaMethods package and projects the studied DNA sequence to the subspace. The Q-residuals (euclidean distance between the sequences and the modeled subspace) of the DNA studied sequence are returned as output.
Usage
1
PCanalysis(TFBS, nPCs, Sequences)
Arguments
TFBS
DNA numerical matrix of known TFBS
nPCs
Number of principal components used to build the model
Sequences
numerical matrix of DNA sequences to study (converted as a numerical matrix)
Value
residus: Euclidean distance from the studied sequences to the modeled motif
Author(s)
Erola Pairo <epeiroatibec.pcb.ub.es>
See Also
PCA, kfold.PCA
MEET documentation built on May 2, 2019, 1:45 p.m.
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Description Usage Arguments Value Author(s) See Also
Description
Performs a PC analysis of numerical DNA sequences, using the pcaMethods package and projects the studied DNA sequence to the subspace. The Q-residuals (euclidean distance between the sequences and the modeled subspace) of the DNA studied sequence are returned as output.
Usage
1 | PCanalysis(TFBS, nPCs, Sequences)
|
Arguments
TFBS |
DNA numerical matrix of known TFBS |
nPCs |
Number of principal components used to build the model |
Sequences |
numerical matrix of DNA sequences to study (converted as a numerical matrix) |
Value
residus: Euclidean distance from the studied sequences to the modeled motif
Author(s)
Erola Pairo <epeiroatibec.pcb.ub.es>
See Also
PCA, kfold.PCA
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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