PredictPCA: Q-residuals detection of TFBS, using a principal components...
In MEET: MEET: Motif Elements Estimation Toolkit

Description Usage Arguments Details Value Author(s) See Also Examples

Performs the detection of a modeled motif in a chormosomics sequence

1	PredictPCA(iicc)

iicc

options described in the MEET program

The specific options for this program are the model constructed for the motif, the background probability for the studied organism and the DNA query sequence

output:list of the TFBS found in the studied DNA sequence: Sequence (BS found), pvalue (Pvalue of the given BS) and position (Position within the studied DNA sequence).

Erola Pairo <epeiroatibec.pcb.ub.es>

ModelPCA, biol.PCA, MEET, detection

require("MEET")
data(iicc)
data(TranscriptionFactor)
iicc$method<-"PCA"
iicc$pvalor<-0.1
iicc$parameterIdeal<-2
iicc$model<-ModelPCA(iicc)
DetectedSequences<-PredictPCA(iicc)