motif.mast: MEME format to training matrix
In MEET: MEET: Motif Elements Estimation Toolkit
Description
Usage
Arguments
Author(s)
Description
Given a set of DNA sequences in fasta format, this function converts this set of sequences in a training matrix
Usage
1
motif.mast(input,Factortrans,k,m)
Arguments
input
a set of DNA seqeunces in fasta format
Factortrans
Transcription Factor Binding Sites
k
Length of the candidate sequence
m
Binnding Sites sequences that is extracted from training matrix
Author(s)
Joan Maynou <joan.maynouatupc.edu> and Erola Pairo <epeiroatibec.pcb.ub.es>
MEET documentation built on May 2, 2019, 1:45 p.m.
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Description Usage Arguments Author(s)
Description
Given a set of DNA sequences in fasta format, this function converts this set of sequences in a training matrix
Usage
1 | motif.mast(input,Factortrans,k,m)
|
Arguments
input |
a set of DNA seqeunces in fasta format |
Factortrans |
Transcription Factor Binding Sites |
k |
Length of the candidate sequence |
m |
Binnding Sites sequences that is extracted from training matrix |
Author(s)
Joan Maynou <joan.maynouatupc.edu> and Erola Pairo <epeiroatibec.pcb.ub.es>
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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