writeMEME: Write a training matrix in a MEME/MAST format
In MEET: MEET: Motif Elements Estimation Toolkit
Description
Usage
Arguments
Author(s)
See Also
Examples
Description
This function rewrites a training matrix (a set of aligned nucleotide sequences) in a MEME/MAST format.
Usage
1
writeMEME(matriu, m)
Arguments
matriu
A set of aligned nucleotide sequences
m
Number of TFBS sequence used on leave-one-out cross-validation
Author(s)
Erola Pairo <epeiroatibec.pcb.ub.es> and Joan Maynou <joan.maynouatupc.edu>
See Also
MEME,transMEME,DMEME,DtransMEMEME
Examples
1
2
3
4
require("MEET")
data(TranscriptionFactor)
matriu<-TranscriptionFactor
writeMEME(matriu, m=1)
MEET documentation built on May 2, 2019, 1:45 p.m.
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Description Usage Arguments Author(s) See Also Examples
Description
This function rewrites a training matrix (a set of aligned nucleotide sequences) in a MEME/MAST format.
Usage
1 | writeMEME(matriu, m)
|
Arguments
matriu |
A set of aligned nucleotide sequences |
m |
Number of TFBS sequence used on leave-one-out cross-validation |
Author(s)
Erola Pairo <epeiroatibec.pcb.ub.es> and Joan Maynou <joan.maynouatupc.edu>
See Also
MEME,transMEME,DMEME,DtransMEMEME
Examples
1 2 3 4 | require("MEET")
data(TranscriptionFactor)
matriu<-TranscriptionFactor
writeMEME(matriu, m=1)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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