Description Usage Arguments Details Author(s) References See Also Examples
PredictDivergence contains a set of functions for detection of Transcription Factor Binding sites through parametric divergence. This algorithm evaluates the variation on the total Renyi entropy of a set of sequences assuming correlation between positions in the bindng sequence.
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iicc |
A set of inicial conditions for the MEET-package (mode, method, background, alignment, threshold, parameters, Transcriptionfactor, nummotif, lenmotif, sentit, position, missing, vector, gapopen, maxiters, gapextend) |
This function integrates the Mutual Information (Renyi order equal 1) and parametric divergence (Renyi order different 1)
Joan Maynou <joan.maynouatupc.edu>
J. Maynou, M. Vallverdu, F. Claria, J.J. Gallardo-Chacon, P. Caminal and A. Perera," Transcription Factor Binding Site Detection through Position Cross-Mutual Information variability analysis". 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society.
PredictEntropy, PredictMEME, PredictMDscan, PredictPCA and PredictMATCH
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